![]() GSAASeqSP has been successfully used with 20000m on a Linux server.įull_path is the complete path of the GSAA.jar fileĮxample: Java –Xmx1000m –jar C:/programs/gsaa/GSAA.jar ![]() If you get error message “out of memory”, try to increase 1000m to 2000m or more. Parameter –Xmx specifies the amount of memory available to Java. To launch GSAA, double click the icon of GSAA.jar file or use command ![]() Remember, lib and GSAA.jar must be in the same directory. Unzip or untar the downloaded program file into a directory. GSAASeqSP can run on any computer (Windows, Mac OS X, Linux etc.) that supports Java7+. Software GSAASeqSP is released as a functionally independent module in our GSAA platform that is available for free download at GSAASeqSP: A toolset for gene set association analysis of RNA-Seq data. The software GSAASeqSP is a Java based desktop application which implements methods described in GSAASeqSP identify pathways/gene sets significantly associated with a disease or a phenotype by analyzing genome-wide patterns of gene expression variation measured by RNA-Seq technology. ![]() Gene Set Association Analysis for RNA-Seq with Sample Permutation (GSAASeqSP) is a toolset for gene set association analysis of RNA-Seq count data.
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